Environment Creation and Installation

1. Create a new environment following the steps:

   • Open the mambaforge terminal (‘Miniforge Prompt’) and type:

     (base) $ mamba create -n circadipy_env python=3.8
     

     Note

     Python version must be 3.8, because PyMICE, one of the dependencies of circadipy to read Intellicage data, is not compatible with versions of Python higher than 3.8.

   • Press ‘y’ when prompted.

   • After the environment is created, type:

     (base) $ mamba activate circadipy_env
     

2. Install the dependences from PyPI repository by typing:

   (circadipy_env) $ pip install circadipy